So the best way I found was to edit the .fsq or .xml file and just cut and paste in the new coordinates.
<Effect>B_CUSTOM_SubBuffer=0.00x58.65x99.77x101.00,E_CHOICE_Faces_Eyes=(off),E_CHOICE_Faces_FaceDefinition=Skull 1,E_CHOICE_Faces_TimingTrack=Siamese_Lyric</Effect>
<Effect>B_CUSTOM_SubBuffer=0.00x58.65x99.77x101.00,E_CHOICE_Faces_Eyes=Auto,E_CHOICE_Faces_FaceDefinition=Skull 1,E_CHOICE_Faces_TimingTrack=Siamese_Lyric</Effect>
<Effect>B_CUSTOM_SubBuffer=0.00x29.00x99.00x70.00,E_CHOICE_Faces_Eyes=(off),E_CHOICE_Faces_FaceDefinition=Skull 2,E_CHOICE_Faces_TimingTrack=Siamese_Lyric</Effect>
<Effect>B_CUSTOM_SubBuffer=0.00x29.00x99.00x70.00,E_CHOICE_Faces_Eyes=Auto,E_CHOICE_Faces_FaceDefinition=Skull 2,E_CHOICE_Faces_TimingTrack=Siamese_Lyric</Effect>